PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000141403
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 547aa    MW: 61138.5 Da    PI: 6.4708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000141403genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.89.9e-07271292223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     C +Cgk F+r  nL+ H+r H
  MDP0000141403 271 FCAICGKGFKRDANLRMHMRGH 292
                    6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-5268296No hitNo description
PROSITE profilePS5015711.884270297IPR007087Zinc finger, C2H2
SMARTSM003550.012270292IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5271321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
SMARTSM0035553319352IPR015880Zinc finger, C2H2-like
SMARTSM0035521357379IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDPKERQWDT WENPSTGNDV TNTISSDHQP FTSYKSRQHQ QKWESPSVLD YEMGMELSFQ  60
KFHQPSDSQT SHTCNSNNDT KIPDREDGRM XEAQQPDKIQ DWDPRMTLND LSFLEQKIHQ  120
LQDLVHVIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAQ LISTAGSLLP SVKHTLSTTI  180
PXTGQFGQLG GSFIPSAAGN DVXVKLQVNS GSKLADQANH TDLISNYGTE HMEEHETKDE  240
EDADEGENLP PGSYEILQLE KEEILAPHTH FCAICGKGFK RDANLRMHMR GHGDEYKTAA  300
ALAKPNKESS SEPTLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS  360
RCNSKKFSVI ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPPDEPKG  420
TLGPTNHGEG SEASNRVGSI NFSFGSTAPG GGGGSQNLMD VKESIDDPTS YFSPLNFETC  480
NFDGFHELPR PPFEDSEISF LMPVSFLATP NQWRSQEFKT MGSKVELPLL DRACRKRGSD  540
DLEAARP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.80500.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365851.10.0PREDICTED: LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLD9ZIT00.0D9ZIT0_MALDO; C2H2L domain class transcription factor
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein